Article
Guidelines for the use and interpretation of assays for monitoring autophagy
Registro en:
KLIONSKY, Daniel J. et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy, v.8, n.4, p.445-544, 2012.
1554-8627
10.4161/auto.19496
1554-8635
Autor
Klionsky, Daniel J.
Resumen
Rubem F. Menna-Barreto - Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Celular. Rio de Janeiro, RJ, Brasil Outros autores: Daniel J. Klionsky,1,2,3,* Fabio C. Abdalla,4 Hagai Abeliovich,5 Robert T. Abraham,6 Abraham Acevedo-Arozena,7 Khosrow Adeli,8
Lotta Agholme,9 Maria Agnello,10 Patrizia Agostinis,11 Julio A. Aguirre-Ghiso,12 Hyung Jun Ahn,13 Ouardia Ait-Mohamed,14
Slimane Ait-Si-Ali,14 Takahiko Akematsu,15 Shizuo Akira,16 Hesham M. Al-Younes,17 Munir A. Al-Zeer,18 Matthew L. Albert,19
Roger L. Albin,20,21 Javier Alegre-Abarrategui,22 Maria Francesca Aleo,23 Mehrdad Alirezaei,24 Alexandru Almasan,25
Maylin Almonte-Becerril,26 Atsuo Amano,27 Ravi Amaravadi,28 Shoba Amarnath,29 Amal O. Amer,30,31 Nathalie Andrieu-Abadie,32,33
Vellareddy Anantharam,34 David K. Ann,35 Shailendra Anoopkumar-Dukie,36 Hiroshi Aoki,37 Nadezda Apostolova,38
Giuseppe Arancia,39 John P. Aris,40 Katsuhiko Asanuma,41 Nana Y.O. Asare,42 Hisashi Ashida,43 Valerie Askanas,44 David S. Askew,45
Patrick Auberger,46,47 Misuzu Baba,48 Steven K. Backues,1 Eric H. Baehrecke,49 Ben A. Bahr,50 Xue-Yuan Bai,51 Yannick Bailly,52
Robert Baiocchi,53 Giulia Baldini,54 Walter Balduini,55 Andrea Ballabio,56,57 Bruce A. Bamber,58 Edward T.W. Bampton,59
Gábor Bánhegyi,60 Clinton R. Bartholomew,1 Diane C. Bassham,61 Robert C. Bast, Jr.,62 Henri Batoko,63 Boon-Huat Bay,64
Isabelle Beau,65 Daniel M. Béchet,66 Thomas J. Begley,67 Christian Behl,68 Christian Behrends,69 Soumeya Bekri,70 Bryan Bellaire,71
Linda J. Bendall,72 Luca Benetti,73 Laura Berliocchi,74 Henri Bernardi,75 Francesca Bernassola,76 Sébastien Besteiro,77
Ingrid Bhatia-Kissova,78 Xiaoning Bi,79 Martine Biard-Piechaczyk,80 Janice S. Blum,81 Lawrence H. Boise,82 Paolo Bonaldo,83
David L. Boone,84 Beat C. Bornhauser,85 Karina R. Bortoluci,86 Ioannis Bossis,87 Frédéric Bost,46 Jean-Pierre Bourquin,85
Patricia Boya,88 Michaël Boyer-Guittaut,89 Peter V. Bozhkov,90 Nathan R. Brady,91 Claudio Brancolini,92 Andreas Brech,93
Jay E. Brenman,94 Ana Brennand,95 Emery H. Bresnick,96 Patrick Brest,97 Dave Bridges,1 Molly L. Bristol,98 Paul S. Brookes,99
Eric J. Brown,100 John H. Brumell,101a,101b Nicola Brunetti-Pierri,56 Ulf T. Brunk,102 Dennis E. Bulman,103 Scott J. Bultman,104
Geert Bultynck,105 Lena F. Burbulla,106 Wilfried Bursch,107 Jonathan P. Butchar,108 Wanda Buzgariu,109 Sergio P. Bydlowski,110
Ken Cadwell,111 Monika Cahová,112 Dongsheng Cai,113 Jiyang Cai,114 Qian Cai,115 Bruno Calabretta,116 Javier Calvo-Garrido,117
Nadine Camougrand,118 Michelangelo Campanella,119,120 Jenny Campos-Salinas,121 Eleonora Candi,122 Lizhi Cao,123
Allan B. Caplan,124 Simon R. Carding,125,126 Sandra M. Cardoso,127 Jennifer S. Carew,128 Cathleen R. Carlin,129 Virginie Carmignac,130
Leticia A.M. Carneiro,131 Serena Carra,132,133 Rosario A. Caruso,134 Giorgio Casari,135 Caty Casas,136 Roberta Castino,137
Eduardo Cebollero,138,139 Francesco Cecconi,140,141 Jean Celli,142 Hassan Chaachouay,143 Han-Jung Chae,144 Chee-Yin Chai,145
David C. Chan,146 Edmond Y. Chan,147 Raymond Chuen-Chung Chang,148 Chi-Ming Che,149 Ching-Chow Chen,150
Guang-Chao Chen,151 Guo-Qiang Chen,152 Min Chen,153 Quan Chen,154,155 Steve S.-L. Chen,156 WenLi Chen,157 Xi Chen,158
Xiangmei Chen,51 Xiequn Chen,159 Ye-Guang Chen,160 Yingyu Chen,161 Yongqiang Chen,162 Yu-Jen Chen,163 Zhixiang Chen,164
Alan Cheng,165 Christopher H.K. Cheng,166 Yan Cheng,167,168 Heesun Cheong,169 Jae-Ho Cheong,170 Sara Cherry,171
Russ Chess-Williams,172 Zelda H. Cheung,173 Eric Chevet,174 Hui-Ling Chiang,175 Roberto Chiarelli,10 Tomoki Chiba,176
Lih-Shen Chin,177 Shih-Hwa Chiou,178 Francis V. Chisari,24 Chi Hin Cho,179 Dong-Hyung Cho,180 Augustine M.K. Choi,181
DooSeok Choi,182 Kyeong Sook Choi,183 Mary E. Choi,184 Salem Chouaib,185 Divaker Choubey,186 Vinay Choubey,187
Charleen T. Chu,188,189 Tsung-Hsien Chuang,190 Sheau-Huei Chueh,191 Taehoon Chun,192 Yong-Joon Chwae,193 Mee-Len Chye,194
Roberto Ciarcia,195 Maria R. Ciriolo,141,196 Michael J. Clague,197 Robert S.B. Clark,198 Peter G.H. Clarke,199 Robert Clarke,200
Patrice Codogno,201 Hilary A. Coller,202 María I. Colombo,203 Sergio Comincini,204 Maria Condello,39 Fabrizio Condorelli,205
Mark R. Cookson,206 Graham H. Coombs,147 Isabelle Coppens,207 Ramon Corbalan,208 Pascale Cossart,209,210 Paola Costelli,211
Safia Costes,212 Ana Coto-Montes,213 Eduardo Couve,214 Fraser P. Coxon,215 James M. Cregg,216 José L. Crespo,217
Marianne J. Cronjé,218 Ana Maria Cuervo,219,220,221 Joseph J. Cullen,222 Mark J. Czaja,221,223 Marcello D’Amelio,224
Arlette Darfeuille-Michaud,225,226 Lester M. Davids,228 Faith E. Davies,229 Massimo De Felici,230 John F. de Groot,231
Cornelis A.M. de Haan,232 Luisa De Martino,233 Angelo De Milito,234 Vincenzo De Tata,235 Jayanta Debnath,236 Alexei Degterev,237
Benjamin Dehay,238 Lea M.D. Delbridge,239 Francesca Demarchi,240 Yi Zhen Deng,241 Jörn Dengjel,242 Paul Dent,243
Donna Denton,244,245 Vojo Deretic,246 Shyamal D. Desai,247 Rodney J. Devenish,248,249 Mario Di Gioacchino,250 Gilbert Di Paolo,251,252
Chiara Di Pietro,253 Guillermo Díaz-Araya,254 Inés Díaz-Laviada,255 Maria T. Diaz-Meco,256 Javier Diaz-Nido,257 Ivan Dikic,69,258
Savithramma P. Dinesh-Kumar,259 Wen-Xing Ding,260 Clark W. Distelhorst,261,262,263,264,265 Abhinav Diwan,266,267
Mojgan Djavaheri-Mergny,268 Svetlana Dokudovskaya,269 Zheng Dong,270 Frank C. Dorsey,272 Victor Dosenko,273
James J. Dowling,20,274 Stephen Doxsey,275 Marlène Dreux,276 Mark E. Drew,30 Qiuhong Duan,277 Michel A. Duchosal,278
Karen Duff,251,252 Isabelle Dugail,279,280 Madeleine Durbeej,130 Michael Duszenko,281 Charles L. Edelstein,282 Aimee L. Edinger,283
Gustavo Egea,284 Ludwig Eichinger,285 N. Tony Eissa,286 Suhendan Ekmekcioglu,287 Wafik S. El-Deiry,168,288 Zvulun Elazar,289
Mohamed Elgendy,290 Lisa M. Ellerby,291 Kai Er Eng,292 Anna-Mart Engelbrecht,293 Simone Engelender,294 Jekaterina Erenpreisa,295
Ricardo Escalante,117 Audrey Esclatine,65 Eeva-Liisa Eskelinen,296 Lucile Espert,80 Virginia Espina,297 Huizhou Fan,298 Jia Fan,299
Qi-Wen Fan,300 Zhen Fan,62 Shengyun Fang,301,302 Yongqi Fang,303 Manolis Fanto,304 Alessandro Fanzani,23 Thomas Farkas,305
Jean-Claude Farré,306 Mathias Faure,307 Marcus Fechheimer,308 Carl G. Feng,309 Jian Feng,310 Qili Feng,311 Youji Feng,312 László Fésüs,313 Ralph Feuer,314 Maria E. Figueiredo-Pereira,315 Gian Maria Fimia,316 Diane C. Fingar,317 Steven Finkbeiner,318
Toren Finkel,319 Kim D. Finley,320 Filomena Fiorito,233 Edward A. Fisher,321 Paul B. Fisher,322 Marc Flajolet,323
Maria L. Florez-McClure,324 Salvatore Florio,195 Edward A. Fon,325 Francesco Fornai,326 Franco Fortunato,327 Rati Fotedar,256
Daniel H. Fowler,29 Howard S. Fox,328 Rodrigo Franco,329 Lisa B. Frankel,330 Marc Fransen,331 José M. Fuentes,332 Juan Fueyo,231
Jun Fujii,333 Kozo Fujisaki,334 Eriko Fujita,335 Mitsunori Fukuda,336 Ruth H. Furukawa,308 Matthias Gaestel,337 Philippe Gailly,338
Malgorzata Gajewska,339 Brigitte Galliot,109 Vincent Galy,340 Subramaniam Ganesh,341 Barry Ganetzky,342 Ian G. Ganley,343
Fen-Biao Gao,344 George F. Gao,345 Jinming Gao,346 Lorena Garcia,347 Guillermo Garcia-Manero,348 Mikel Garcia-Marcos,349
Marjan Garmyn,350 Andrei L. Gartel,351 Evelina Gatti,352 Mathias Gautel,353 Thomas R. Gawriluk,354 Matthew E. Gegg,355
Jiefei Geng,356 Marc Germain,357 Jason E. Gestwicki,1,3,358 David A. Gewirtz,98 Saeid Ghavami,359 Pradipta Ghosh,360
Anna M. Giammarioli,361 Alexandra N. Giatromanolaki,362 Spencer B. Gibson,363 Robert W. Gilkerson,364 Michael L. Ginger,365
Henry N. Ginsberg,366 Jakub Golab,367 Michael S. Goligorsky,368 Pierre Golstein,352 Candelaria Gomez-Manzano,231,369
Ebru Goncu,370 Céline Gongora,371 Claudio D. Gonzalez,372 Ramon Gonzalez,373 Cristina González-Estévez,374
Rosa Ana González-Polo,332 Elena Gonzalez-Rey,121 Nikolai V. Gorbunov,375 Sharon Gorski,376 Sandro Goruppi,377
Roberta A. Gottlieb,320 Devrim Gozuacik,378 Giovanna Elvira Granato,195 Gary D. Grant,36 Kim N. Green,379 Aleš Gregorc,380
Frédéric Gros,381 Charles Grose,382 Thomas W. Grunt,383 Philippe Gual,46,47 Jun-Lin Guan,162,317 Kun-Liang Guan,384
Sylvie M. Guichard,385 Anna S. Gukovskaya,386 Ilya Gukovsky,386 Jan Gunst,387 Asa B. Gustafsson,388 Andrew J. Halayko,359,389
Amber N. Hale,354 Sandra K. Halonen,390 Maho Hamasaki,391 Feng Han,392 Ting Han,1,317 Michael K. Hancock,393 Malene Hansen,256
Hisashi Harada,394 Masaru Harada,395 Stefan E. Hardt,396 J. Wade Harper,356 Adrian L. Harris,397 James Harris,398 Steven D. Harris,399
Makoto Hashimoto,400 Jeffrey A. Haspel,181,401 Shin-ichiro Hayashi,402 Lori A. Hazelhurst,403 Congcong He,404 You-Wen He,405
Marie-Josée Hébert,406 Kim A. Heidenreich,407 Miep H. Helfrich,215 Gudmundur V. Helgason,408 Elizabeth P. Henske,181
Brian Herman,409 Paul K. Herman,410 Claudio Hetz,411 Sabine Hilfiker,412 Joseph A. Hill,413 Lynne J. Hocking,215 Paul Hofman,97
Thomas G. Hofmann,415 Jörg Höhfeld,416 Tessa L. Holyoake,408 Ming-Huang Hong,417 David A. Hood,418 Gökhan S. Hotamisligil,419
Ewout J. Houwerzijl,420 Maria Høyer-Hansen,421 Bingren Hu,422 Chien-An A. Hu,423 Hong-Ming Hu,424 Ya Hua,425 Canhua Huang,426
Ju Huang,101a Shengbing Huang,427 Wei-Pang Huang,428 Tobias B. Huber,429 Won-Ki Huh,430 Tai-Ho Hung,431 Ted R. Hupp,432
Gang Min Hur,433 James B. Hurley,434 Sabah N.A. Hussain,435 Patrick J. Hussey,436 Jung Jin Hwang,437 Seungmin Hwang,438
Atsuhiro Ichihara,439 Shirin Ilkhanizadeh,300 Ken Inoki,440 Takeshi Into,441 Valentina Iovane,233 Juan L. Iovanna,442 Nancy Y. Ip,443
Yoshitaka Isaka,444 Hiroyuki Ishida,445 Ciro Isidoro,137 Ken-ichi Isobe,446 Akiko Iwasaki,447 Marta Izquierdo,257 Yotaro Izumi,448
Panu M. Jaakkola,449 Marja Jäättelä,305 George R. Jackson,450 William T. Jackson,451 Bassam Janji,452 Marina Jendrach,453
Ju-Hong Jeon,454 Eui-Bae Jeung,455 Hong Jiang,231 Hongchi Jiang,456 Jean X. Jiang,457 Ming Jiang,458 Qing Jiang,459 Xuejun Jiang,460
Xuejun Jiang,461 Alberto Jiménez,462 Meiyan Jin,1,2 Shengkan Jin,463 Cheol O. Joe,464 Terje Johansen,465 Daniel E. Johnson,466
Gail V.W. Johnson,99 Nicola L. Jones,467 Bertrand Joseph,234 Suresh K. Joseph,468 Annie M. Joubert,469 Gábor Juhász,470
Lucienne Juillerat-Jeanneret,471 Chang Hwa Jung,472 Yong-Keun Jung,473 Kai Kaarniranta,474 Allen Kaasik,187 Tomohiro Kabuta,475
Motoni Kadowaki,476 Katarina Kagedal,477 Yoshiaki Kamada,478 Vitaliy O. Kaminskyy,479 Harm H. Kampinga,133
Hiromitsu Kanamori,480 Chanhee Kang,481 Khong Bee Kang,482 Kwang Il Kang,483 Rui Kang,484 Yoon-A Kang,96 Tomotake Kanki,485
Thirumala-Devi Kanneganti,486 Haruo Kanno,487 Anumantha G. Kanthasamy,34 Arthi Kanthasamy,34 Vassiliki Karantza,488
Gur P. Kaushal,489 Susmita Kaushik,219,220,221 Yoshinori Kawazoe,490 Po-Yuan Ke,156,491 John H. Kehrl,492 Ameeta Kelekar,493
Claus Kerkhoff,494 David H. Kessel,495 Hany Khalil,496 Jan A.K.W. Kiel,497 Amy A. Kiger,498 Akio Kihara,499 Deok Ryong Kim,500
Do-Hyung Kim,501 Dong-Hou Kim,502 Eun-Kyoung Kim,503 Hyung-Ryong Kim,504 Jae-Sung Kim,505 Jeong Hun Kim,506
Jin Cheon Kim,507 John K. Kim,1,508 Peter K. Kim,101a,509 Seong Who Kim,510 Yong-Sun Kim,511,512 Yonghyun Kim,513 Adi Kimchi,514
Alec C. Kimmelman,515 Jason S. King,516 Timothy J. Kinsella,517 Vladimir Kirkin,518 Lorrie A. Kirshenbaum,359,519
Katsuhiko Kitamoto,520 Kaio Kitazato,521 Ludger Klein,522 Walter T. Klimecki,523 Jochen Klucken,524 Erwin Knecht,525 Ben C.B. Ko,526
Jan C. Koch,527 Hiroshi Koga,220,221 Jae-Young Koh,528 Young Ho Koh,511 Masato Koike,529 Masaaki Komatsu,530 Eiki Kominami,531
Hee Jeong Kong,532 Wei-Jia Kong,533 Viktor I. Korolchuk,534 Yaichiro Kotake,535 Michael I. Koukourakis,536 Juan B. Kouri Flores,26
Attila L. Kovács,470 Claudine Kraft,537 Dimitri Krainc,538 Helmut Krämer,539 Carole Kretz-Remy,540 Anna M. Krichevsky,541
Guido Kroemer,279,542 Rejko Krüger,106 Oleg Krut,543 Nicholas T. Ktistakis,544 Chia-Yi Kuan,545 Roza Kucharczyk,546 Ashok Kumar,547
Raj Kumar,548 Sharad Kumar,244,245 Mondira Kundu,549 Hsing-Jien Kung,550 Tino Kurz,102 Ho Jeong Kwon,551 Albert R. La Spada,552,553
Frank Lafont,554 Trond Lamark,465 Jacques Landry,555 Jon D. Lane,556 Pierre Lapaquette,557 Jocelyn F. Laporte,558 Lajos László,470
Sergio Lavandero,347,413 Josée N. Lavoie,555 Robert Layfield,559 Pedro A. Lazo,560 Weidong Le,561,562 Laurent Le Cam,371
Daniel J. Ledbetter,354 Alvin J.X. Lee,563 Byung-Wan Lee,564 Gyun Min Lee,464 Jongdae Lee,360 Ju-Hyun Lee,565 Michael Lee,566
Myung-Shik Lee,567 Sug Hyung Lee,568 Christiaan Leeuwenburgh,569 Patrick Legembre,570 Renaud Legouis,571 Michael Lehmann,572
Huan-Yao Lei,573 Qun-Ying Lei,574 David A. Leib,575 José Leiro,576 John J. Lemasters,577 Antoinette Lemoine,578 Maciej S. Lesniak,579
Dina Lev,580 Victor V. Levenson,581 Beth Levine,404 Efrat Levy,565,583 Faqiang Li,584 Jun-Lin Li,585 Lian Li,177 Sheng Li,562,586 Weijie Li,587
Xue-Jun Li,588 Yan-bo Li,589 Yi-Ping Li,590 Chengyu Liang,591 Qiangrong Liang,592 Yung-Feng Liao,593 Pawel P. Liberski,594
Andrew Lieberman,358 Hyunjung J. Lim,595 Kah-Leong Lim,596 Kyu Lim,597 Chiou-Feng Lin,598 Fu-Cheng Lin,599 Jian Lin,600
Jiandie D. Lin,1,317 Kui Lin,601 Wan-Wan Lin,150 Weei-Chin Lin,286,602 Yi-Ling Lin,156 Rafael Linden,603 Paul Lingor,527
Jennifer Lippincott-Schwartz,604 Michael P. Lisanti,605 Paloma B. Liton,606 Bo Liu,426 Chun-Feng Liu,607 Kaiyu Liu,608 Leyuan Liu,609 - Qiong A. Liu,610 Wei Liu,611 Young-Chau Liu,612 Yule Liu,160 Richard A. Lockshin,613 Chun-Nam Lok,149 Sagar Lonial,82
Benjamin Loos,293 Gabriel Lopez-Berestein,62 Carlos López-Otín,614 Laura Lossi,615 Michael T. Lotze,484 Peter Lőw,470 Binfeng Lu,616
Bingwei Lu,617 Bo Lu,618 Zhen Lu,62 Frédéric Luciano,46,47 Nicholas W. Lukacs,358 Anders H. Lund,330 Melinda A. Lynch-Day,1,2
Yong Ma,456 Fernando Macian,619 Jeff P. MacKeigan,620 Kay F. Macleod,621 Frank Madeo,622 Luigi Maiuri,623 Maria Chiara Maiuri,279
Davide Malagoli,624 May Christine V. Malicdan,625 Walter Malorni,361,626 Na Man,627 Eva-Maria Mandelkow,628 Stéphen Manon,118
Irena Manov,629 Kai Mao,1,2 Xiang Mao,630 Zixu Mao,177,631 Philippe Marambaud,632 Daniela Marazziti,253 Yves L. Marcel,633
Katie Marchbank,634 Piero Marchetti,635 Stefan J. Marciniak,636 Mateus Marcondes,4 Mohsen Mardi,637 Gabriella Marfe,76
Guillermo Mariño,638 Maria Markaki,639a Mark R. Marten,513 Seamus J. Martin,640 Camille Martinand-Mari,641 Wim Martinet,642
Marta Martinez-Vicente,643 Matilde Masini,644 Paola Matarrese,645 Saburo Matsuo,646 Raffaele Matteoni,253 Andreas Mayer,647
Nathalie M. Mazure,648 David J. McConkey,580,649 Melanie J. McConnell,650 Catherine McDermott,651 Christine McDonald,652
Gerald M. McInerney,292 Sharon L. McKenna,653 BethAnn McLaughlin,654 Pamela J. McLean,538 Christopher R. McMaster,655
G. Angus McQuibban,509 Alfred J. Meijer,656 Miriam H. Meisler,508 Alicia Meléndez,613,657 Thomas J. Melia,658 Gerry Melino,59,659
Maria A. Mena,660 Javier A. Menendez,661 Rubem F. S. Menna-Barreto,662 Manoj B. Menon,337 Fiona M. Menzies,663
Carol A. Mercer,664 Adalberto Merighi,615 Diane E. Merry,665 Stefania Meschini,39 Christian G. Meyer,666 Thomas F. Meyer,18
Chao-Yu Miao,667 Jun-Ying Miao,668 Paul A.M. Michels,95 Carine Michiels,669 Dalibor Mijaljica,248 Ana Milojkovic,670
Saverio Minucci,290 Clelia Miracco,671 Cindy K. Miranti,672 Ioannis Mitroulis,673 Keisuke Miyazawa,674 Noboru Mizushima,675
Baharia Mograbi,97 Simin Mohseni,677 Xavier Molero,678 Bertrand Mollereau,679 Faustino Mollinedo,560 Takashi Momoi,680
Iryna Monastyrska,232 Martha M. Monick,681 Mervyn J. Monteiro,301,682 Michael N. Moore,683 Rodrigo Mora,684 Kevin Moreau,663
Paula I. Moreira,127 Yuji Moriyasu,685 Jorge Moscat,256 Serge Mostowy,686 Jeremy C. Mottram,687 Tomasz Motyl,339
Charbel E.-H. Moussa,688 Sylke Müller,687 Sylviane Muller,381 Karl Münger,689 Christian Münz,690 Leon O. Murphy,691
Maureen E. Murphy,692 Antonio Musarò,693 Indira Mysorekar,694 Eiichiro Nagata,695 Kazuhiro Nagata,696 Aimable Nahimana,697
Usha Nair,1 Toshiyuki Nakagawa,698 Kiichi Nakahira,181 Hiroyasu Nakano,699 Hitoshi Nakatogawa,700 Meera Nanjundan,701
Naweed I. Naqvi,241 Derek P. Narendra,702 Masashi Narita,703 Miguel Navarro,412 Steffan T. Nawrocki,128 Taras Y. Nazarko,306
Andriy Nemchenko,413 Mihai G. Netea,704 Thomas P. Neufeld,705 Paul A. Ney,706 Ioannis P. Nezis,93 Huu Phuc Nguyen,707
Daotai Nie,708 Ichizo Nishino,709 Corey Nislow,710 Ralph A. Nixon,565 Takeshi Noda,391 Angelika A. Noegel,285 Anna Nogalska,44
Satoru Noguchi,709 Lucia Notterpek,711 Ivana Novak,712 Tomoyoshi Nozaki,713 Nobuyuki Nukina,714 Thorsten Nürnberger,715
Beat Nyfeler,691 Keisuke Obara,499 Terry D. Oberley,716 Salvatore Oddo,717 Michinaga Ogawa,718 Toya Ohashi,719,720 Koji Okamoto,721
Nancy L. Oleinick,264,722,723 F. Javier Oliver,121 Laura J. Olsen,2 Stefan Olsson,724 Onya Opota,725 Timothy F. Osborne,726
Gary K. Ostrander,727 Kinya Otsu,728 Jing-hsiung James Ou,591 Mireille Ouimet,633 Michael Overholtzer,460 Bulent Ozpolat,62
Paolo Paganetti,729 Ugo Pagnini,233 Nicolas Pallet,730 Glen E. Palmer,731 Camilla Palumbo,76 Tianhong Pan,732
Theocharis Panaretakis,234 Udai Bhan Pandey,733 Zuzana Papackova,112 Issidora Papassideri,734 Irmgard Paris,735 Junsoo Park,736
Ohkmae K. Park,192 Jan B. Parys,105 Katherine R. Parzych,1,2 Susann Patschan,737 Cam Patterson,738 Sophie Pattingre,371
John M. Pawelek,739 Jianxin Peng,740 David H. Perlmutter,741 Ida Perrotta,742 George Perry,743 Shazib Pervaiz,596,744 Matthias Peter,745
Godefridus J. Peters,746 Morten Petersen,747 Goran Petrovski,748 James M. Phang,611 Mauro Piacentini,141 Philippe Pierre,352
Valérie Pierrefite-Carle,749 Gérard Pierron,750 Ronit Pinkas-Kramarski,751 Antonio Piras,752 Natik Piri,753 Leonidas C. Platanias,754
Stefanie Pöggeler,755 Marc Poirot,32,756 Angelo Poletti,757 Christian Poüs,758 Mercedes Pozuelo-Rubio,759 Mette Prætorius-Ibba,760
Anil Prasad,761 Mark Prescott,248 Muriel Priault,118 Nathalie Produit-Zengaffinen,762 Ann Progulske-Fox,763
Tassula Proikas-Cezanne,764 Serge Przedborski,252,364,765 Karin Przyklenk,766 Rosa Puertollano,767 Julien Puyal,199 Shu-Bing Qian,768
Liang Qin,769 Zheng-Hong Qin,770 Susan E. Quaggin,771 Nina Raben,772 Hannah Rabinowich,188 Simon W. Rabkin,773
Irfan Rahman,774 Abdelhaq Rami,775 Georg Ramm,248,776 Glenn Randall,777 Felix Randow,778 V. Ashutosh Rao,779
Jeffrey C. Rathmell,405,780 Brinda Ravikumar,781 Swapan K. Ray,782 Bruce H. Reed,783 John C. Reed,256 Fulvio Reggiori,138
Anne Régnier-Vigouroux,784 Andreas S. Reichert,785 John J. Reiners, Jr.,786 Russel J. Reiter,409 Jun Ren,787 José L. Revuelta,462
Christopher J. Rhodes,788 Konstantinos Ritis,673 Elizete Rizzo,789 Jeffrey Robbins,790 Michel Roberge,791 Hernan Roca,792
Maria C. Roccheri,10 Stephane Rocchi,46,793 H. Peter Rodemann,143 Santiago Rodríguez de Córdoba,794 Bärbel Rohrer,795
Igor B. Roninson,796 Kirill Rosen,655 Magdalena M. Rost-Roszkowska,797 Mustapha Rouis,798 Kasper M.A. Rouschop,799
Francesca Rovetta,23 Brian P. Rubin,800 David C. Rubinsztein,663 Klaus Ruckdeschel,801 Edmund B. Rucker, III,354 Assaf Rudich,802
Emil Rudolf,803 Nelson Ruiz-Opazo,804 Rossella Russo,805 Tor Erik Rusten,93 Kevin M. Ryan,516 Stefan W. Ryter,181
David M. Sabatini,806,807 Junichi Sadoshima,808 Tapas Saha,200 Tatsuya Saitoh,16 Hiroshi Sakagami,809 Yasuyoshi Sakai,810
Ghasem Hoseini Salekdeh,811 Paolo Salomoni,812 Paul M. Salvaterra,813 Guy Salvesen,256 Rosa Salvioli,814 Anthony M.J. Sanchez,75
José A. Sánchez-Alcázar,815 Ricardo Sánchez-Prieto,816 Marco Sandri,83,817,818 Uma Sankar,819 Poonam Sansanwal,820
Laura Santambrogio,619,821 Shweta Saran,822 Sovan Sarkar,807 Minnie Sarwal,820,823 Chihiro Sasakawa,718 Ausra Sasnauskiene,824
Miklós Sass,470 Ken Sato,825 Miyuki Sato,825 Anthony H.V. Schapira,355 Michael Scharl,826 Hermann M. Schätzl,827 Wiep Scheper,828
Stefano Schiaffino,818 Claudio Schneider,240 Marion E. Schneider,829 Regine Schneider-Stock,830 Patricia V. Schoenlein,831
Daniel F. Schorderet,762,832 Christoph Schüller,833 Gary K. Schwartz,834 Luca Scorrano,817,835 Linda Sealy,836 Per O. Seglen,837
Juan Segura-Aguilar,838 Iban Seiliez,839 Oleksandr Seleverstov,840 Christian Sell,841 Jong Bok Seo,842 Duska Separovic,843
Vijayasaradhi Setaluri,844 Takao Setoguchi,845 Carmine Settembre,56,57 John J. Shacka,846 Mala Shanmugam,754 Irving M. Shapiro,847 -Eitan Shaulian,848 Reuben J. Shaw,849 James H. Shelhamer,850 Han-Ming Shen,851 Wei-Chiang Shen,852 Zu-Hang Sheng,853
Yang Shi,854 Kenichi Shibuya,855 Yoshihiro Shidoji,856 Jeng-Jer Shieh,857 Chwen-Ming Shih,858 Yohta Shimada,719
Shigeomi Shimizu,859 Takahiro Shintani,860 Orian S. Shirihai,861 Gordon C. Shore,862 Andriy A. Sibirny,863 Stan B. Sidhu,864
Beata Sikorska,594 Elaine C.M. Silva-Zacarin,4 Alison Simmons,865 Anna Katharina Simon,866 Hans-Uwe Simon,867
Cristiano Simone,868 Anne Simonsen,869 David A. Sinclair,870 Rajat Singh,871 Debasish Sinha,872 Frank A. Sinicrope,427,873
Agnieszka Sirko,546 Parco M. Siu,874 Efthimios Sivridis,362 Vojtech Skop,875 Vladimir P. Skulachev,876 Ruth S. Slack,357
Soraya S. Smaili,877 Duncan R. Smith,878 Maria S. Soengas,879 Thierry Soldati,880 Xueqin Song,881 Anil K. Sood,882 Tuck Wah Soong,596
Federica Sotgia,116 Stephen A. Spector,553,883 Claudia D. Spies,884 Wolfdieter Springer,885 Srinivasa M. Srinivasula,886
Leonidas Stefanis,887 Joan S. Steffan,888 Ruediger Stendel,889 Harald Stenmark,93 Anastasis Stephanou,890 Stephan T. Stern,891
Cinthya Sternberg,892 Björn Stork,893 Peter Strålfors,677 Carlos S. Subauste,261,894 Xinbing Sui,895 David Sulzer,364,896 Jiaren Sun,897
Shi-Yong Sun,82 Zhi-Jun Sun,898 Joseph J.Y. Sung,899 Kuninori Suzuki,900 Toshihiko Suzuki,901 Michele S. Swanson,902
Charles Swanton,563 Sean T. Sweeney,903 Lai-King Sy,149 Gyorgy Szabadkai,904 Ira Tabas,366 Heinrich Taegtmeyer,905 Marco Tafani,906
Krisztina Takács-Vellai,907 Yoshitaka Takano,908 Kaoru Takegawa,909 Genzou Takemura,480 Fumihiko Takeshita,910
Nicholas J. Talbot,911 Kevin S.W. Tan,912 Keiji Tanaka,530 Kozo Tanaka,913 Daolin Tang,484 Dingzhong Tang,914,915 Isei Tanida,916
Bakhos A. Tannous,538,917 Nektarios Tavernarakis,639a,639b Graham S. Taylor,918 Gregory A. Taylor,405,919 J. Paul Taylor,920
Lance S. Terada,404 Alexei Terman,921 Gianluca Tettamanti,922 Karin Thevissen,923 Craig B. Thompson,169 Andrew Thorburn,924
Michael Thumm,925 FengFeng Tian,926 Yuan Tian,323 Glauco Tocchini-Valentini,253 Aviva M. Tolkovsky,927 Yasuhiko Tomino,41
Lars Tönges,527 Sharon A. Tooze,928 Cathy Tournier,929 John Tower,930 Roberto Towns,162 Vladimir Trajkovic,931
Leonardo H. Travassos,932 Ting-Fen Tsai,933 Mario P. Tschan,934 Takeshi Tsubata,935 Allan Tsung,936 Boris Turk,937
Lorianne S. Turner,938 Suresh C. Tyagi,939 Yasuo Uchiyama,529 Takashi Ueno,531 Midori Umekawa,1 Rika Umemiya-Shirafuji,334
Vivek K. Unni,940 Maria I. Vaccaro,372 Enza Maria Valente,941 Greet Van den Berghe,387 Ida J. van der Klei,497 Wouter G. van Doorn,942
Linda F. van Dyk,943 Marjolein van Egmond,944 Leo A. van Grunsven,945 Peter Vandenabeele,946 Wim P. Vandenberghe,947
Ilse Vanhorebeek,387 Eva C. Vaquero,948 Guillermo Velasco,949 Tibor Vellai,907 Jose Miguel Vicencio,904 Richard D. Vierstra,584
Miquel Vila,643,950 Cécile Vindis,33,951 Giampietro Viola,952 Maria Teresa Viscomi,953 Olga V. Voitsekhovskaja,954
Clarissa von Haefen,884 Marcela Votruba,955 Keiji Wada,475 Richard Wade-Martins,22 Cheryl L. Walker,956 Craig M. Walsh,957
Jochen Walter,958 Xiang-Bo Wan,959 Aimin Wang,960 Chenguang Wang,961 Dawei Wang,456 Fan Wang,962 Fen Wang,609
Guanghui Wang,770 Haichao Wang,963 Hong-Gang Wang,167,168 Horng-Dar Wang,964 Jin Wang,153 Ke Wang,1,2 Mei Wang,744
Richard C. Wang,965 Xinglong Wang,263 Xuejun Wang,966 Ying-Jan Wang,967 Yipeng Wang,628 Zhen Wang,968
Zhigang Charles Wang,969 Zhinong Wang,970 Derick G. Wansink,971 Diane M. Ward,972 Hirotaka Watada,973 Sarah L. Waters,634,728,974
Paul Webster,975 Lixin Wei,976 Conrad C. Weihl,977 William A. Weiss,300 Scott M. Welford,722 Long-Ping Wen,978
Caroline A. Whitehouse,634 J. Lindsay Whitton,24 Alexander J. Whitworth,979 Tom Wileman,980 John W. Wiley,162 Simon Wilkinson,981
Dieter Willbold,982 Roger L. Williams,778 Peter R. Williamson,983 Bradly G. Wouters,984 Chenghan Wu,985 Dao-Cheng Wu,986
William K.K. Wu,899 Andreas Wyttenbach,987 Ramnik J. Xavier,988 Zhijun Xi,989 Pu Xia,990 Gengfu Xiao,991 Zhiping Xie,992
Zhonglin Xie,993 Da-zhi Xu,994 Jianzhen Xu,995 Liang Xu,996 Xiaolei Xu,997 Ai Yamamoto,252,364 Akitsugu Yamamoto,998
Shunhei Yamashina,999 Michiaki Yamashita,1000 Xianghua Yan,1001 Mitsuhiro Yanagida,1002 Dun-Sheng Yang,565 Elizabeth Yang,1003
Jin-Ming Yang,167,168 Shi Yu Yang,1004 Wannian Yang,1005 Wei Yuan Yang,151 Zhifen Yang,256 Meng-Chao Yao,1006 Tso-Pang Yao,780
Behzad Yeganeh,359 Wei-Lien Yen,1 Jia-jing Yin,589 Xiao-Ming Yin,1007 Ook-Joon Yoo,1008 Gyesoon Yoon,1009 Seung-Yong Yoon,502
Tomohiro Yorimitsu,1010 Yuko Yoshikawa,1011 Tamotsu Yoshimori,391 Kohki Yoshimoto,1012 Ho Jin You,1013 Richard J. Youle,702
Anas Younes,1014 Li Yu,160 Long Yu,1015 Seong-Woon Yu,503 Wai Haung Yu,251,252 Zhi-Min Yuan,1016 Zhenyu Yue,1017
Cheol-Heui Yun,1018 Michisuke Yuzaki,1019 Olga Zabirnyk,611 Elaine Silva-Zacarin,4 David Zacks,1021 Eldad Zacksenhaus,1022
Nadia Zaffaroni,1023 Zahra Zakeri,613 Herbert J. Zeh, III,1024 Scott O. Zeitlin,1025 Hong Zhang,1026 Hui-Ling Zhang,770,1027
Jianhua Zhang,846 Jing-Pu Zhang,968 Lin Zhang,1028 Long Zhang,1029 Ming-Yong Zhang,1030 Xu Dong Zhang,1031 Mantong Zhao,1,2
Yi-Fang Zhao,898 Ying Zhao,1032,1033 Zhizhuang J. Zhao,1034 Xiaoxiang Zheng,1035 Boris Zhivotovsky,479 Qing Zhong,1036
Cong-Zhao Zhou,627 Changlian Zhu,1037 Wei-Guo Zhu,1033 Xiao-Feng Zhu,1038 Xiongwei Zhu,263 Yuangang Zhu,915
Teresa Zoladek,546 Wei-Xing Zong,1039 Antonio Zorzano,1040 Jürgen Zschocke1041 and Brian Zuckerbraun 1042. In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued
to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been
expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have
described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable
methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a
difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or
autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete
process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result
in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within,
lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is
especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily
equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a
concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity.
Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine
macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are
focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part
on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most
appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we
consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by
discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.