Computational Analysis of Transposable Elements and CircRNAs in Plants

Capítulos de libros

Fecha

2021-01-01

Registro en:

Methods in Molecular Biology, v. 2362, p. 147-172.

1940-6029

1064-3745

http://hdl.handle.net/11449/221925

10.1007/978-1-0716-1645-1_9

2-s2.0-85109502015

https://repositorioslatinoamericanos.uchile.cl/handle/2250/5402055

Autor

Federal University of Technology—Paraná (UTFPR)

Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)

Universidade Estadual Paulista (UNESP)

Universidad de Chile

Universidade de São Paulo (USP)

Institución

Universidade Estadual Paulista (Brasil)

Resumen

This chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.

Materias

Bioinformatics

CircRNAs

Circular RNA

Computational methods

Transposable elements

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