AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata

Neira, Gonzalo; Cortez, Diego; Jil, Joaquín; Holmes, David S. [Chile. Universidad Mayor. Facultad de Ciencias. Centro de Investigación de Genómica y Bioinformática]

Artículos de revistas

Fecha

2020-10-01

Registro en:

Neira, G., Cortez, D., Jil, J., & Holmes, D. S. (2020). AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata. Bioinformatics (Oxford, England), 36(19), 4970-4971.

1367-4803

eISSN: 1460-2059

http://repositorio.umayor.cl/xmlui/handle/sibum/7385

https://doi.org/10.1093/bioinformatics/btaa638

https://academic.oup.com/bioinformatics/article-abstract/36/19/4970/5875601

https://pubmed.ncbi.nlm.nih.gov/32702093/

http://www.cienciavida.org/wp-content/uploads/2020/09/Neira2020.pdf

10.1093/bioinformatics/btaa638

https://repositorioslatinoamericanos.uchile.cl/handle/2250/4455164

Autor

Neira, Gonzalo

Cortez, Diego

Jil, Joaquín

Holmes, David S. [Chile. Universidad Mayor. Facultad de Ciencias. Centro de Investigación de Genómica y Bioinformática]

Institución

Universidad Mayor (Chile)

Resumen

Motivation: There are about 600 available genome sequences of acidophilic organisms (grow at a pH<5) from the three domains of the Tree of Life. Information about acidophiles is scattered over many heterogeneous sites making it extraordinarily difficult to link physiological traits with genomic data. We were motivated to generate a curated, searchable database to address this problem. Results: AciDB 1.0 is a curated database of sequenced acidophiles that enables researchers to execute complex queries linking genomic features to growth data, environmental descriptions and taxonomic information.

Materias

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