info:eu-repo/semantics/article
A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis
Fecha
2021-11Registro en:
Costa, Zirlane Portugal; Varani, Alessandro Mello; Cauz-Santos, Luiz Augusto; Sader, Mariela Analía; Giopatto, Helena Augusto; et al.; A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis; John Wiley and Sons Inc; Plant Genome; 14; 3; 11-2021; 1-22
1940-3372
CONICET Digital
CONICET
Autor
Costa, Zirlane Portugal
Varani, Alessandro Mello
Cauz-Santos, Luiz Augusto
Sader, Mariela Analía
Giopatto, Helena Augusto
Zirpoli, Bruna
Callot, Caroline
Cauet, Stephane
Marande, William
Souza Cardoso, Jessica Luana
Pinheiro, Daniel Guariz
Kitajima, João Paulo
Dornelas, Marcelo Carnier
Harand, Andrea Pedrosa
Berges, Helene
Monteiro-Vitorello, Claudia Barros
Carneiro Vieira, Maria Lucia
Resumen
The genus Passiflora comprises a large group of plants popularly known as passionfruit, much appreciated for their exotic flowers and edible fruits. The species (∼500) are morphologically variable (e.g., growth habit, size, and color of flowers) and are adapted to distinct tropical ecosystems. In this study, we generated the genome of the wild diploid species Passiflora organensis Gardner by adopting a hybrid assembly approach. Passiflora organensis has a small genome of 259 Mbp and a heterozygosity rate of 81%, consistent with its reproductive system. Most of the genome sequences could be integrated into its chromosomes with cytogenomic markers (satellite DNA) as references. The repeated sequences accounted for 58.55% of the total DNA analyzed, and the Tekay lineage was the prevalent retrotransposon. In total, 25,327 coding genes were predicted. Passiflora organensis retains 5,609 singletons and 15,671 gene families. We focused on the genes potentially involved in the locus determining self-incompatibility and the MADS-box gene family, allowing us to infer expansions and contractions within specific subfamilies. Finally, we recovered the organellar DNA. Structural rearrangements and two mitoviruses, besides relics of other mobile elements, were found in the chloroplast and mt-DNA molecules, respectively. This study presents the first draft genome assembly of a wild Passiflora species, providing a valuable sequence resource for genomic and evolutionary studies on the genus, and support for breeding cropped passionfruit species.