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Stabilization of partially folded states in protein folding/misfolding transitions by hydrostatic pressure
(Associação Brasileira de Divulgação Científica, 2019)
Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure
(Wiley-Blackwell, 2014-07-01)
The three-dimensional structure of proteins is determined by their linear amino acid sequences but decipherment of the underlying protein folding code has remained elusive. Recent studies have suggested that burials, as ...
Conformational folding status and folding levels based on global protein properties a computacional approach [recurso electrónico]
(2019-11-05)
Proteins during the folding process undergo many events that continuously modify their structure adjusting their structural elements, and so altering their physical properties. These events are hard to observe by experimental ...
Stochastic strategy to analyze protein folding
(2005)
We propose a stochastic approach to combine methods from computational physics and Tsallis statistics in order to analyze the potential energy hypersurface of the proteins. This approach enables us to study protein folding ...
Peptide and protein folding
(Elsevier Science, 2001-03-12)
Ab initio peptide folding, and its role in the reductionistic approach towards the understanding of protein folding are discussed from the points of view of past, present and possible future developments. It is believed ...
Dynamics of one-state downhill protein folding
(National Academy of Sciences, 2009-01)
The small helical protein BBL has been shown to fold and unfold in the absence of a free energy barrier according to a battery of quantitative criteria in equilibrium experiments, including probe-dependent equilibrium ...
Effect of the thermostat in the molecular dynamics simulation on the folding of the model protein chignolin
(SPRINGERNEW YORK, 2012)
Molecular dynamics simulations of the model protein chignolin with explicit solvent were carried out, in order to analyze the influence of the Berendsen thermostat on the evolution and folding of the peptide. The dependence ...