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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
(2013)
Background: Nitrate and other nitrogen metabolites can act as signals that regulate global gene expression in plants. Adaptive changes in plant morphology and physiology triggered by changes in nitrate availability are ...
Probing infectious disease by single-cell RNA sequencing: progresses and perspectives
The increasing application of single-cell RNA sequencing (scRNA-seq) technology in life
science and biomedical research has significantly increased our understanding of the cellular
heterogeneities in immunology, oncology ...
Interspecies RNA interactome of pathogen and host in a heritable defensive strategy
(Frontiers Media, 2021)
Communication with bacteria deeply impacts the life history traits of their hosts.
Through specific molecules and metabolites, bacteria can promote short- and longterm
phenotypic and behavioral changes in the nematode ...
Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle
(2022-01-01)
The aim of this study was to identify novel lncRNA differentially expressed (DE) between divergent animals for beef tenderness and marbling traits in Nellore cattle. Longissimus thoracis muscle samples from the 20 most ...
RNA-Seq differential expression analysis: An extended review and a software tool
(2017-12-01)
The correct identification of differentially expressed genes (DEGs) between specific conditions is a key in the understanding phenotypic variation. High-throughput transcriptome sequencing (RNA-Seq) has become the main ...
Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem
(Nature Publishing Group, 2017-03)
The agronomical relevant tomato-Pseudomonas syringae pv. tomato pathosystem is widely used to explore and understand the underlying mechanisms of the plant immune response. Transcript abundance estimation, mainly through ...
Identification of novel mRNA isoforms associated with meat tenderness using RNA sequencing data in beef cattle
(2021-03-01)
The Warner-Bratzler shear force (WBSF) and myofibrillar fragmentation index (MFI) are complementary methodologies used to measure beef tenderness. Longissimus thoracis samples from the 20 most extreme bulls (out of 80 bulls ...