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Genome sequence of Azospirillum brasilense REC3, isolated from strawberry plants
(American Society for Microbioly, 2018)
The genome sequence of a plant growth-promoting bacterium and
biocontrol agent, Azospirillum brasilense REC3, isolated from strawberry roots, is
reported here. The A. brasilense REC3 total genome contains 7,229,924 bp ...
Draft genome sequence of the immunobiotic strain Lactobacillus jensenii TL2937
(American Society for Microbiology, 2017-03-02)
The genome of the immunomodulatory strain Lactobacillus jensenii TL2937 is described here. The draft genome has a total length of 1,678,416 bp, a G+C content of 34.3%, and 1,470 predicted protein-coding sequences. The ...
Genome data vs MLST for exploring intraspecific evolutionary history in bacteria: Much is not always better
(Elsevier Science, 2021-09)
Genome-based phylogeny has been proposed to be more accurate than phylogeny based in a few genes as MLSTbased phylogeny. However, much is not always better. Here we analyzed 368 complete genomes corresponding to 9 bacterial ...
Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning (IF 5.610)
(Oxford University Press, 2020-08)
Motivation: The genome-wide discovery of microRNAs (miRNAs) involves identifying sequences having the highest chance of being a novel miRNA precursor (pre-miRNA), within all the possible sequences in a complete genome. The ...
Phantom epistasis in genomic selection: on the predictive ability of epistatic models
(Genetics Society of America, 2020-09-01)
Genomic selection uses whole-genome marker models to predict phenotypes or genetic values for complex traits. Some of these models fit interaction terms between markers, and are therefore called epistatic. The biological ...
Genome sizes in diploid and allopolyploid Arachis L. species (section Arachis)
(Springer, 2015-11-08)
Species of section Arachis with x = 10 are important for peanut breeding and have been organized in five different genomes (A, B, D, F and K). The few available estimates of the DNA content are inconsistent and hampered ...
Draft genome sequence of Lactobacillus plantarum MPL16, a wakame-utilizing immunobiotic strain isolated from swine feces
(American Society for Microbiology, 2017-03-09)
The genome of the immunomodulatory Lactobacillus plantarum MPL16, a strain able to ferment wakame (Undaria pinnatifida), is described here. The reads were assembled into contigs with a total size 3,278,495 bp. The genome ...
Advances and Discoveries in Myxozoan Genomics
(Elsevier B. V., 2021-06)
Myxozoans are highly diverse and globally distributed cnidarian endoparasites in freshwater and marine habitats. They have adopted a heteroxenous life cycle, including invertebrate and fish hosts, and have been associated ...
The role of sequence duplication in transcriptional regulation and genome evolution
(Bentham Science Publishers, 2019-01-24)
Sequence duplication is nowadays recognized as an important mechanism that underlies the evolution of eukaryote genomes, being indeed one of the most powerful strategies for the generation of adaptive diversity by modulating ...
MITE Tracker : an accurate approach to identify miniature inverted-repeat transposable elements in large genomes
(BioMed Central, 2018)
Background:
Miniature inverted-repeat transposable elements (MITEs) are short, non-autonomous class II transposable elements present in a high number of conserved copies in eukaryote genomes. An accurate identification ...