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Distributional modelling and parsimony analysis of endemicity of Senecio in the Mediterranean-type climate area of Central Chile
(2004)
Aim: Floristic blocks and areas of endemism resulting from a parsimony analysis of endemicity (PAE) using raw floristic data versus data generated from distributional modelling for 130 species in the genus Senecio Tourn. ...
Computer science and parsimony: a reappraisal, with discussion of methods for poorly structured datasets
(Wiley, 2015-04)
In recent years, several publications in computer science journals have proposed new heuristic methods for parsimony analysis. This contribution discusses those papers, including methods highly praised by their authors, ...
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2021-09)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...
Parsimony analysis of phylogenomic datasets (II): evaluation of PAUP*, MEGA and MPBoot
(Wiley Blackwell Publishing, Inc, 2021-06)
This paper examines the implementation of parsimony methods in the programs PAUP*, MEGA and MPBoot, and compares them with TNT. PAUP* implements standard, well-tested algorithms, and flexible search strategies and options ...
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2022-02)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...
Parsimony analysis of phylogenomic datasets (II): evaluation of PAUP*, MEGA and MPBoot
(Wiley Blackwell Publishing, Inc, 2022-02)
This paper examines the implementation of parsimony methods in the programs PAUP*, MEGA and MPBoot, and compares them with TNT. PAUP* implements standard, well-tested algorithms, and flexible search strategies and options ...
Biogeography on the early distribution of cuckoos (Aves: Cuculiformes)
(Sociedade Brasileira de Zoologia, 2012-06-01)
Cuckoos are widely distributed, but are concentrated in the tropics, where they occupy a wide range of habitats. Both terrestrial and arboreal behaviors can be found in this group, but there is no consensus on as to whether ...
Biogeography on the early distribution of cuckoos (Aves: Cuculiformes)
(Sociedade Brasileira de Zoologia, 2012-06-01)
Cuckoos are widely distributed, but are concentrated in the tropics, where they occupy a wide range of habitats. Both terrestrial and arboreal behaviors can be found in this group, but there is no consensus on as to whether ...
Optimization of polytomies: State set and parallel operations
(Academic Press Inc Elsevier Science, 2002-02)
New algorithms for calculating the most parsimonious state sets for polytomies under Fitch parsimony are described. Because they are based on state set operations, these algorithms can be extended for optimization of several ...
Identification of priority areas for conservation in an arid zone: application of parsimony analysis of endemicity in the vascular flora of the Antofagasta region, northern Chile
(2002)
Endemic taxa are those restricted to a specific area, and could be defined as the exclusive biodiversity of a region. An area of endemism contains taxa found nowhere else and could be catalogued as irreplaceable and of ...