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Tackling Hypotheticals in Helminth Genomes
(Elsevier, 2018-03)
Advancements in genome sequencing have led to the rapid accumulation of uncharacterized ‘hypothetical proteins’ in the public databases. Here we provide a community perspective and some best-practice approaches for the ...
Recogito-in-a-Box: From Annotation to Digital Edition
(Modern Languages Open, 2020-08-28)
Through the combination of two popular approaches in the Digital Humanities – digital editions and semantic annotation – this tutorial will present simple ways to create, analyse and export semantic annotations from texts ...
Genomic re-assessment of the transposable element landscape of the potato genome
(Springer Verlag Berlín, 2020-05-20)
Transposable elements are DNA sequences with the ability to auto-replicate and move that occupy large proportions of the host genome. TEs are responsible for shaping the genome size and are major drivers of gene regulation, ...
Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage
(Cold Spring Harbor Laboratory Press, 2021-04)
Characterizing transcription start sites is essential for understanding the regulatory mechanisms that control gene expression. Recently, a new bovine genome assembly (ARS-UCD1.2) with high continuity, accuracy, and ...
Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
(Frontiers Media, 2021-05)
A comprehensive annotation of transcript isoforms in domesticated species is lacking. Especially considering that transcriptome complexity and splicing patterns are not wellconserved between species, this presents a ...
Computational functional analysis of lipid metabolic enzymes
(Springer, 2017-06-29)
The computational analysis of enzymes that participate in lipid metabolism has both common and unique challenges when compared to the whole protein universe. Some of the hurdles that interfere with the functional annotation ...
K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes
(Wiley, 2021-09)
The annotation of repetitive sequences within plant genomes can help in the interpretation of observed phenotypes. Moreover, repeat masking is required for tasks such as whole-genome alignment, promoter analysis, or pangenome ...
Yerba mate (Ilex paraguariensis, A. St.-Hil.) de novo transcriptome assembly based on tissue specific genomic expression profiles
(BioMed Central, 2018-12)
Background: The most common infusion in southern Latin-American countries is prepared with dried leaves of Ilex paraguariensis A. St.-Hil., an aboriginal ancestral beverage known for its high polyphenols concentration ...
Consistent prediction of GO protein localization
(Nature Publishing Group, 2018-12)
The GO-Cellular Component (GO-CC) ontology provides a controlled vocabulary for the consistent description of the subcellular compartments or macromolecular complexes where proteins may act. Current machine learning-based ...
Bibliografía comentada sobre los análisis de egagrópilas de aves rapaces en ArgentinaAnnotated bibliography on raptor pellets analyses in Argentina
(Neotropical Ornithological Society, 2002-12)
Se compiló una lista bibliográfica comentada basada en estudios dietarios efectuados a partir del análisis de egagrópilas de aves rapaces en Argentina. Esta lista, cubriendo el lapso 1961–2000, incluye 142 artículos, 9 ...