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Protein conformational diversity correlates with evolutionary rate
(Oxford University Press, 2013-04)
Native state of proteins is better represented by an ensemble of conformers in equilibrium than by only one structure. The extension of structural differences between conformers characterizes the conformational diversity ...
Protein conformational diversity modulates sequence divergence
(Oxford University Press, 2012-03)
It is well established that the conservation of protein structure during evolution constrains sequence divergence. The conservation of certain physicochemical environments to preserve protein folds and then the biological ...
CoDNaS: a database of conformational diversity in the native state of proteins
(Oxford University Press, 2013-10)
Motivation: Conformational diversity is a key concept in the understanding of different issues related with protein function such as the study of catalytic processes in enzymes, protein-protein recognition, protein evolution ...
Large scale analysis of protein conformational transitions from aqueous to non-aqueous media
(BioMed Central, 2018-01)
Background: Biocatalysis in organic solvents is nowadays a common practice with a large potential in Biotechnology. Several studies report that proteins which are co-crystallized or soaked in organic solvents preserve their ...
Global conformations of proteins as predicted from the modeling of their CZE mobility data
(Wiley VCH Verlag, 2011-10)
Estimations of protein global conformations in well-specified physicochemical microenvironments are obtained through global structural parameters defined from polypeptide-scale analyses. For this purpose protein electrophoretic ...
Conformational diversity and the emergence of sequence signatures during evolution
(Current Biology, 2015-03)
Proteins' native structure is an ensemble of conformers in equilibrium, including all their respective functional states and intermediates. The induced-fit first and the pre-equilibrium theories later, described how ...
Renaissance of Allostery to Disrupt Protein Kinase Interactions
(Elsevier Science London, 2019-11)
Protein–protein interactions often regulate the activity of protein kinases by allosterically modulating the conformation of the ATP-binding site. Bidirectional allostery implies that reverse modulation (i.e., from the ...
Evolutionary Conserved Positions Define Protein Conformational Diversity
(Public Library of Science, 2016-03)
Conformational diversity of the native state plays a central role in modulating protein function. The selection paradigm sustains that different ligands shift the conformational equilibrium through their binding to ...
Influence of initial protein structure on the properties of soybean protein edible films
(Smithers Rapra Technology, 2017)
The aim of this work was to show the decisive importance of initial soy protein conformation on the resulting protein films processability and functionality. It analyzed how different soybean protein isolates with similar ...
Ultracompact states of native proteins
(Elsevier Science, 2017-11)
A statistical analysis of circa 20,000 X-ray structures evidenced the effects of temperature of data collection on protein intramolecular distances and degree of compaction. Identical chains with data collected at cryogenic ...