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Phylogenomics-based reconstruction of protozoan species tree
(Libertas Academica, 2016)
Parsimony analysis of phylogenomic datasets (I): scripts and guidelines for using TNT (Tree Analysis using New Technology)
(Wiley Blackwell Publishing, Inc, 2022-02)
We discuss here the use of TNT (Tree Analysis using New Technology) for phylogenomic analysis. For such data, parsimony is a useful alternative to model-based analyses, which frequently utilize models that make unrealistic ...
Corallimorpharians are not "naked corals'': insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses
(Peerj Inc, 2016)
Calcification is one of the most distinctive traits of scleractinian corals. Their hard skeletons form the substratum of reef ecosystems and confer on corals their remarkable diversity of shapes. Corallimorpharians are ...
Phylogenomics of Trypanosoma cruzi: Few evidence of TcI/TcII mosaicism in TcIII challenges the hypothesis of an ancient TcI/TcII hybridization
(Elsevier Science, 2017-06)
Phylogenetic relationships among major lineages of Trypanosoma cruzi are still debatable. Particularly, it is controversial the origin of two main lineages: TcIII and TcIV. Some authors proposed that these lineages have ...
Phylogenomics-based reconstruction of protozoan species tree
(Libertas Academica, 2011)
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
(2021)
Recent phylogenomic analyses based on the maternally inherited plastid organelle have enlightened evolutionary relationships between the subfamilies of Orchidaceae and most of the tribes. However, uncertainty remains within ...
Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
(BioMed Central, 2016-06)
Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack ...