Now showing items 1-10 of 905
Weighting dissimilarities to detect communities in networks
(Royal Soc., 2015)
Many complex systems can be described as networks exhibiting inner organization as communities of nodes. The identification of communities is a key factor to understand community-based functionality. We propose a family ...
Combining graph and flux based structures to decipher phenotypic essential metabolites within metabolic networks
(PeerJ Inc., 2017)
Back ground. The emergence of functions in biological systems is a long-standing issue that can now be addressed at the cell level with the emergence of high throughput technologies for genome sequencing and phenotyping. ...
Spectral analysis and the dynamic response of complex networks
(American Physical SocCollege PkEUA, 2005)
Metabolic networks from (M, R) systems and autopoiesis perspective
This paper is the first one of a series devoted to the analysis of metabolic networks. Its aim is to establish the theoretical framework for this analysis. Two different lines of research are considered: the one about ...
Continuous Modeling of Metabolic Networks With Gene Regulation in Yeast and In Vivo Determination of Rate Parameters
A continuous model of a metabolic network including gene regulation to simulate metabolic fluxes during batch cultivation of yeast Saccharomyces cerevisiae was developed. The metabolic network includes reactions ...
Network connectance analysis as a tool to understand homeostasis of plants under environmental changes
The homeostasis of plants under environmental constraints may be maintained by alterations in the organization of their physiological networks. The ability to control a network depends on the strength of the connections ...
Metabolic Profiling and Metabolite Correlation Network Analysis Reveal that Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation
(Multidisciplinary Digital Publishing Institute, 2021-09)
Root fungal endophytes are essential mediators of plant nutrition under mild stress conditions. However, variations in the rhizosphere environment, such as nutrient depletion, could result in a stressful situation for both ...
miRNApath: A database of miRNAs, target genes and metabolic pathways
MicroRNAs (miRNAs) are small non-coding RNAs that regulate target gene expression and hence play important roles in metabolic pathways. Recent studies have evidenced the interrelation of miRNAs with cell proliferation, ...