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Uncovering patterns of the evolution of genomic sequence entropy and complexity
(2021-03-01)
The lack of consensus concerning the biological meaning of entropy and complexity of genomes and the different ways to assess these data hamper conclusions concerning what are the causes of genomic entropy variation among ...
Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus
(2016-06-01)
Integration of cytogenetics and genomics has become essential to a better view of architecture and function of genomes. Although the advances on genomic sequencing have contributed to study genes and genomes, the repetitive ...
Organization of plastid genomes in the freshwater red algal order Batrachospermales (Rhodophyta)
(Wiley-Blackwell, 2018-02-01)
Little is known about genome organization in members of the order Batrachospermales, and the infra-ordinal relationship remains unresolved. Plastid (cp) genomes of seven members of the freshwater red algal order Batrachospermales ...
Complete mitochondrial genomes of six species of the freshwater red algal order Batrachospermales (Rhodophyta)
(Taylor & Francis Ltd, 2018-01-01)
Only two mitochondrial (mt) genomes had been reported in members of the red algal order Batrachospermales, which are confined to freshwater habitats. Additional mt genomes of six representative members (Batrachospermum ...
Progress in Acidophile Genomics
(Caister Academic PressQuatrini-Nyqvist, Raquel ClaraJohnson, D Barrie, 2016)
By March 2015, 161 genomes of acidophilic
microorganisms had been published, including
126 permanent draft and closed genomes and 35
partial genomes reconstructed from metagenomic
data, distributed between Archaea (71), ...
Comparative genomic analysis of plant-associated bacteria
(Annual Reviews, 2002-01-01)
This review deals with a comparative analysis of seven genome sequences from plant-associated bacteria. These are the genomes of Agrobacterium tumefaciens, Mesorhizobium loti, Sinorhizobium meliloti, Xanthomonas campestris ...
Transposable elements as a potential source for understanding the fish genome
(2011)
Transposable elements are repetitive sequences with the capacity to move inside of the genome. They constitute the majority of the eukaryotic genomes, and are extensively present in the human genome, representing more than ...
The Genomic Organization of Classical Genomes Based on Shannon Entropy
(Karger, 2016-01-01)
Genome assembly of the cichlid fish Astatotilapia latifasciata with focus in population genomics of B chromosome polymorphism
(Universidade Estadual Paulista (Unesp), 2017-08-11)
B chromosomes (Bs) are additional to the standard regular chromosome set (As), and present in all groups of eukaryotes. A reference genome is key to understand genomics aspects of an organism. Here, we present the de novo ...
A Shift in Paradigms: Spatial Genomics Approaches to Reveal Single-Cell Principles of Genome Organization
(Frontiers Media, 2021-11)
The genome tridimensional (3D) organization and its role towards the regulation of key cell processes such as transcription is currently a main question in biology. Interphase chromosomes are spatially segregated into ...